Analysis
File all_mrf_withsamplename.txt
Number of rows 2936
Date 19-06-19 12:08:40
Parameters
Normalization T
Filter.threshold.ms 2
Filter.threshold.obs 0.5
Imputation.MNAR.model gaussian
Imputation.MNAR.percentile 1
Imputation.MCAR.model MNAR
Imputation.MCAR.threshold.obs 3
Imputation.MCAR.threshold.MSMS 3
Imputation.knn.min.occurrences 3
Test.type t.test
Test.log TRUE
Test.alternative two.sided
Test.paired FALSE
Test.var.equal TRUE
Test.adjust.FDR 0.05
Test.adjust.procedure BH
Fold.Change fc
Volcano.threshold.pvalue 0.05
Volcano.threshold.fc 0.58
Comparisons 50fmol-25fmol;50fmol-500amol
Figure.format SVG
Experimental design
Intensity_10amol_1 inj1 10amol
Intensity_10amol_2 inj2 10amol
Intensity_10amol_3 inj3 10amol
Intensity_10amol_4 inj4 10amol
Intensity_50amol_1 inj1 50amol
Intensity_50amol_3 inj3 50amol
Intensity_50amol_2 inj2 50amol
Intensity_50amol_4 inj4 50amol
Intensity_100amol_1 inj1 100amol
Intensity_100amol_3 inj3 100amol
Intensity_100amol_2 inj2 100amol
Intensity_100amol_4 inj4 100amol
Intensity_250amol_1 inj1 250amol
Intensity_250amol_2 inj2 250amol
Intensity_250amol_3 inj3 250amol
Intensity_250amol_4 inj4 250amol
Intensity_500amol_1 inj1 500amol
Intensity_500amol_3 inj3 500amol
Intensity_500amol_2 inj2 500amol
Intensity_500amol_4 inj4 500amol
Intensity_1fmol_1 inj1 1fmol
Intensity_1fmol_2 inj2 1fmol
Intensity_1fmol_3 inj3 1fmol
Intensity_1fmol_4 inj4 1fmol
Intensity_5fmol_1 inj1 5fmol
Intensity_5fmol_3 inj3 5fmol
Intensity_5fmol_2 inj2 5fmol
Intensity_5fmol_4 inj4 5fmol
Intensity_10fmol_1 inj1 10fmol
Intensity_10fmol_2 inj2 10fmol
Intensity_10fmol_3 inj3 10fmol
Intensity_10fmol_4 inj4 10fmol
Intensity_25fmol_1 inj1 25fmol
Intensity_25fmol_2 inj2 25fmol
Intensity_25fmol_3 inj3 25fmol
Intensity_25fmol_4 inj4 25fmol
Intensity_50fmol_1 inj1 50fmol
Intensity_50fmol_2 inj2 50fmol
Intensity_50fmol_3 inj3 50fmol
Intensity_50fmol_4 inj4 50fmol


Less than 0.5% observations in one group at least : 8 Less than 2 files identified by MS/MS : 94 No specific peptides : 14 Proteins kept for analysis : 2820 Proteins filtered Save figure


0.0 0.1 0.2 0.3 0.4 0.5 6 8 10 log(intensity) density Sample 100amol_1 100amol_2 100amol_3 100amol_4 10amol_1 10amol_2 10amol_3 10amol_4 10fmol_1 10fmol_2 10fmol_3 10fmol_4 1fmol_1 1fmol_2 1fmol_3 1fmol_4 250amol_1 250amol_2 250amol_3 250amol_4 25fmol_1 25fmol_2 25fmol_3 25fmol_4 500amol_1 500amol_2 500amol_3 500amol_4 50amol_1 50amol_2 50amol_3 50amol_4 50fmol_1 50fmol_2 50fmol_3 50fmol_4 5fmol_1 5fmol_2 5fmol_3 5fmol_4 Intensity distribution before normalization Save figure

0.0 0.1 0.2 0.3 0.4 0.5 6 8 10 log(intensity) density Sample 100amol_1 100amol_2 100amol_3 100amol_4 10amol_1 10amol_2 10amol_3 10amol_4 10fmol_1 10fmol_2 10fmol_3 10fmol_4 1fmol_1 1fmol_2 1fmol_3 1fmol_4 250amol_1 250amol_2 250amol_3 250amol_4 25fmol_1 25fmol_2 25fmol_3 25fmol_4 500amol_1 500amol_2 500amol_3 500amol_4 50amol_1 50amol_2 50amol_3 50amol_4 50fmol_1 50fmol_2 50fmol_3 50fmol_4 5fmol_1 5fmol_2 5fmol_3 5fmol_4 Intensity distribution after normalization Save figure


Normalization method : each intensity is expressed relatively to a reference intensity, as a ratio of intensities. Intensities of the sample with the lowest number of missing values (Intensity_5fmol_4) are used as reference intensities. Intensities are then centered by substracting the median of the ratios for each sample.



Distribution of NA values accross groups


Group NA_percentage na_count
10amol 4.796099 541
50amol 4.406028 497
100amol 4.104610 463
250amol 4.069149 459
500amol 3.599291 406
1fmol 3.484043 393
5fmol 3.625887 409
10fmol 3.581560 404
25fmol 4.343972 490
50fmol 4.822695 544
All groups 3.983740 4606


Distribution of NA values accross median intensities


5 6 7 8 9 10 0 1 2 3 4 Number of NA log(median intensity) Median intensity / # NA Save figure
0.0 0.5 1.0 1.5 5 6 7 8 9 10 Intensity density sum_na 0 1 2 3 Median intensity / # NA Save figure



Imputed values distribution

0 1000 2000 3000 6 8 10 log(intensity) count Is_imputed FALSE TRUE Log intensities distribution with imputed values Save figure
The gaussian model has a median of 1.96e+05 and a sd of 2.30e+04.



Median deviation

0.00 0.05 0.10 0.15 0.20 -20 -10 0 log2((X-median)/median) density Group 100amol 10amol 10fmol 1fmol 250amol 25fmol 500amol 50amol 50fmol 5fmol Median deviation distribution before processing 0.00 0.05 0.10 0.15 0.20 -20 -10 0 log2((X-median)/median) density Group 100amol 10amol 10fmol 1fmol 250amol 25fmol 500amol 50amol 50fmol 5fmol Median deviation distribution after processing Save figure



CV distribution

0.000 0.025 0.050 0.075 0.100 0.125 0 25 50 75 100 CV density Group 10amol 50amol 100amol 250amol 500amol 1fmol 5fmol 10fmol 25fmol 50fmol Truncated CV distribution before processing 0.000 0.025 0.050 0.075 0.100 0 25 50 75 100 CV density Group 10amol 50amol 100amol 250amol 500amol 1fmol 5fmol 10fmol 25fmol 50fmol Truncated CV distribution after processing Save figure



Heterogeneity of biological error

0 500 1000 1500 2000 10amol 50amol 100amol 250amol 500amol 1fmol 5fmol 10fmol 25fmol 50fmol value Group 10amol 50amol 100amol 250amol 500amol 1fmol 5fmol 10fmol 25fmol 50fmol CV distribution after processing Save figure
0 100 200 300 400 10amol 50amol 100amol 250amol 500amol 1fmol 5fmol 10fmol 25fmol 50fmol count Group 10amol 50amol 100amol 250amol 500amol 1fmol 5fmol 10fmol 25fmol 50fmol Extreme biological errors (boxplot's outliers) Save figure


YC21B_YEAST THRC_YEAST YEM4_YEAST UTP13_YEAST RS27A_YEAST GELS_HUMAN_UPS POC1_YEAST PIL1_YEAST LSP1_YEAST RTK1_YEAST GOSR1_YEAST TMA20_YEAST KAPC_YEAST KAPB_YEAST ARO10_YEAST SYA_YEAST KIN28_YEAST NU116_YEAST VPS1_YEAST VATB_YEAST ERV14_YEAST PFD1_YEAST RQC1_YEAST CWP1_YEAST INM1_YEAST RAEP_YEAST FIS1_YEAST NSG1_YEAST ODO2_YEAST GIN4_YEAST RAD25_YEAST PHO85_YEAST CDK1_YEAST GAL2_YEAST RFC1_YEAST SDHF3_YEAST ARPC1_YEAST EIS1_YEAST T2FB_YEAST SXM1_YEAST MPPB_YEAST YIF1_YEAST SEC12_YEAST ATC6_YEAST METK1_YEAST METK2_YEAST SWC3_YEAST HSP31_YEAST PUR2_YEAST SODM_YEAST DBP6_YEAST TYSY_YEAST NHP6B_YEAST ILV3_YEAST ERF1_YEAST ELO1_YEAST YOR31_YEAST DUN1_YEAST PPB_YEAST YL179_YEAST SEH1_YEAST RNT1_YEAST TOM1_YEAST RCF2_YEAST CTF18_YEAST PROB_YEAST PSR1_YEAST TPS2_YEAST RM04_YEAST RL1A_YEAST KCRM_HUMAN_UPS SGT2_YEAST PAM17_YEAST YLH47_YEAST FYV6_YEAST RPN7_YEAST RL2A_YEAST PPAL_YEAST PRX1_YEAST RM50_YEAST SODC_YEAST AMPL_YEAST OTC_YEAST RV167_YEAST PFKA2_YEAST PFKA1_YEAST NACB1_YEAST RPA49_YEAST GPP1_YEAST GPP2_YEAST MFT1_YEAST DNM1_YEAST MGM1_YEAST PDGFB_HUMAN_UPS AATC_YEAST RSC58_YEAST AIM14_YEAST SNU71_YEAST ALDH4_YEAST ALDH5_YEAST TCPQ_YEAST ALG9_YEAST NOC2_YEAST RIM11_YEAST MAG_YEAST RSC2_YEAST ROM2_YEAST AATM_YEAST CYSD_YEAST ARP5_YEAST TOM71_YEAST YPQ1_YEAST UBX1_YEAST SAM37_YEAST GSHR_YEAST YE145_YEAST THO1_YEAST YG35_YEAST TR120_YEAST KC12_YEAST KC11_YEAST DIG1_YEAST XDJ1_YEAST GON7_YEAST RS18A_YEAST PRS6A_YEAST HMT1_YEAST ENO1_YEAST ENO2_YEAST SEC5_YEAST ADH1_YEAST ADH3_YEAST POP1_YEAST PP11_YEAST SSO1_YEAST SSO2_YEAST TR732_YEAST RHO2_YEAST CSN12_YEAST ENP1_YEAST GNTK_YEAST APT1_YEAST DRE2_YEAST PTK2_YEAST HXKA_YEAST HXKB_YEAST RML2_YEAST RAS1_YEAST SCC4_YEAST SED4_YEAST PUS1_YEAST NOP2_YEAST RL31B_YEAST RL31A_YEAST SAR1_YEAST GDI1_YEAST MED14_YEAST FAR8_YEAST SDA1_YEAST RL26B_YEAST RL26A_YEAST DBF2_YEAST LSM12_YEAST HXT6_YEAST HRP1_YEAST QOR_YEAST ERP3_YEAST RL27A_YEAST RT103_YEAST TPT1_YEAST FRE1_YEAST SKI3_YEAST RM13_YEAST RS21A_YEAST RS3A1_YEAST RS3A2_YEAST HS104_YEAST HSP78_YEAST PAT1_YEAST GPI12_YEAST RRP6_YEAST ANT3_HUMAN_UPS G3P2_YEAST G3P3_YEAST G3P1_YEAST RM41_YEAST TBCB_YEAST RRP40_YEAST RS22A_YEAST RS22B_YEAST HMDH2_YEAST HMDH1_YEAST THI6_YEAST AXL1_YEAST RS17A_YEAST ISD11_YEAST PDC1_YEAST PDC5_YEAST TIM8_YEAST COX1_YEAST PIR1_YEAST CIS3_YEAST HS150_YEAST DENR_YEAST TCPG_YEAST YPD1_YEAST CTR3_YEAST VPS10_YEAST HBB_HUMAN_UPS SMY1_YEAST KCY_YEAST RL1D1_YEAST ARF3_YEAST ACT_YEAST OSTD_YEAST LSM7_YEAST ATPJ_YEAST DCA13_YEAST PCNA_YEAST DRS1_YEAST KAD6_YEAST GAA1_YEAST USO1_YEAST ALE1_YEAST MTW1_YEAST NMT_YEAST ARP2_YEAST RS14A_YEAST RS14B_YEAST IRC22_YEAST YM44_YEAST KTR6_YEAST MED4_YEAST MSP1_YEAST VAC14_YEAST APC1_YEAST ALG6_YEAST OPI10_YEAST SMF3_YEAST LYS2_YEAST ERB1_YEAST YGP9_YEAST SAN1_YEAST RTG1_YEAST HIBCH_YEAST SLK19_YEAST RS3_YEAST KSS1_YEAST FUS3_YEAST RIR2_YEAST BCA2_YEAST BCA1_YEAST VRP1_YEAST HSL7_YEAST PDS5_YEAST AROG_YEAST AROF_YEAST MCM6_YEAST FSH1_YEAST ARI1_YEAST YGD9_YEAST BDH1_YEAST YL225_YEAST DOG1_YEAST CBS_YEAST GYP7_YEAST GSF2_YEAST ADT2_YEAST ADT3_YEAST ADT1_YEAST EF2_YEAST TCB1_YEAST YSH1_YEAST LIPA_YEAST EBP2_YEAST SFGH_YEAST YBP2_YEAST KPR3_YEAST KPR4_YEAST KPR2_YEAST MDY2_YEAST RS9A_YEAST POS5_YEAST UPP_YEAST GST1_YEAST RM10_YEAST HPRT_YEAST DUS4_YEAST FABPH_HUMAN_UPS CBF1_YEAST ATPG_YEAST GABAT_YEAST GDE1_YEAST DLHH_YEAST AIR1_YEAST SPT16_YEAST GLYC_YEAST GLYM_YEAST CRP1_YEAST IMDH2_YEAST IMDH4_YEAST IMDH3_YEAST RPAB5_YEAST YD210_YEAST YHI0_YEAST KA120_YEAST COX8_YEAST STE2_YEAST RT09_YEAST YMC2_YEAST KAPR_YEAST AAKG_YEAST DAK1_YEAST ABF2_YEAST PYRX_YEAST PYRE_YEAST YP260_YEAST NLE1_YEAST MSC1_YEAST NCE2_YEAST SSK2_YEAST ARD1_YEAST MNN11_YEAST NUP59_YEAST TCPD_YEAST RSC9_YEAST SYH_YEAST CMS1_YEAST SYP1_YEAST SIS1_YEAST SCO1_YEAST RL22A_YEAST RL43A_YEAST ODPB_YEAST PIG2_YEAST FET5_YEAST PET10_YEAST EF3B_YEAST EF3A_YEAST IAH1_YEAST RLA2_YEAST COA6_YEAST AFG3_YEAST YTA12_YEAST DHE4_YEAST YME1_YEAST RL23A_YEAST MET18_YEAST OPLA_YEAST HAT2_YEAST VMS1_YEAST RL44A_YEAST DPOD_YEAST FRA1_YEAST TXTP_YEAST TMA64_YEAST ECM29_YEAST YPT10_YEAST TEC1_YEAST SEC65_YEAST SCC1_YEAST PIH1_YEAST INP53_YEAST RRF1_YEAST MDL2_YEAST SNU13_YEAST RM01_YEAST SUR7_YEAST ALY2_YEAST LEU1_YEAST LEU9_YEAST NPT1_YEAST MIA40_YEAST BUL1_YEAST PP2C4_YEAST SYRC_YEAST THTR_YEAST SPC2_YEAST COT1_YEAST CP51_YEAST SNX4_YEAST CLU_YEAST RPB3_YEAST YRA1_YEAST RS13_YEAST RRP3_YEAST TRM11_YEAST UBC4_YEAST ERG7_YEAST HSP76_YEAST HSP75_YEAST NAB3_YEAST RPC2_YEAST VAC8_YEAST BNI5_YEAST DBP3_YEAST MAK11_YEAST YB085_YEAST SNC2_YEAST SNC1_YEAST ERG28_YEAST VTC2_YEAST VTC3_YEAST NOP15_YEAST CYPC_YEAST IES4_YEAST GUAA_YEAST PLSC_YEAST CBP3_YEAST CAPZA_YEAST MHP1_YEAST FKBP_YEAST MAL12_YEAST REP2_YEAST YCY0_YEAST LSM4_YEAST MNN5_YEAST RL19A_YEAST TAF7_YEAST YG32_YEAST ACON2_YEAST YHS2_YEAST CWC26_YEAST ALDH2_YEAST UTP10_YEAST RCC1_YEAST TOM40_YEAST NET1_YEAST SUM1_YEAST SYLC_YEAST ATPD_YEAST UBC1_YEAST CCR4_YEAST ELP4_YEAST ASNS2_YEAST ASNS1_YEAST NOP12_YEAST ARGJ_YEAST YB8B_YEAST JIP5_YEAST TRM82_YEAST TRP_YEAST PIC2_YEAST YAP3_YEAST VMA22_YEAST SDS23_YEAST RBD2_YEAST SUI1_YEAST MMT2_YEAST YD121_YEAST NCA2_YEAST ALG13_YEAST RRB1_YEAST YG3W_YEAST LSM1_YEAST YP010_YEAST MPI_YEAST UFD2_YEAST NDI1_YEAST RRP44_YEAST BFR1_YEAST RPAC1_YEAST PUR6_YEAST VATF_YEAST ERV2_YEAST LYS9_YEAST GCN5_YEAST RSMB_YEAST EFG1P_YEAST DPOA_YEAST YBB0_YEAST MPCP_YEAST MPD1_YEAST THI21_YEAST THI20_YEAST SSH1_YEAST CYC7_YEAST CYC1_YEAST CYC_HUMAN_UPS GCS1_YEAST GET1_YEAST HSM3_YEAST ERG4_YEAST PEX19_YEAST ARPC5_YEAST RL36B_YEAST RL36A_YEAST YJR1_YEAST SEC16_YEAST PPZ1_YEAST KCC2_YEAST H2AZ_YEAST H2A1_YEAST SSU72_YEAST RM17_YEAST RLP7_YEAST TRM1_YEAST HAL5_YEAST HAP2_YEAST RV161_YEAST RPA43_YEAST NU100_YEAST IF2G_YEAST RS26A_YEAST MIC10_YEAST PAL1_YEAST RL15A_YEAST RL15B_YEAST MNN2_YEAST PFD5_YEAST DLDH_YEAST MCM3_YEAST SERA_YEAST SER33_YEAST THDH_YEAST ADRO_YEAST GSP1_YEAST GSP2_YEAST ADPP_YEAST HSP7F_YEAST HSP79_YEAST DHR1_YEAST GTT3_YEAST FAS1_YEAST DHSD_YEAST PGM3_YEAST ATPN_YEAST UCRI_YEAST SKP1_YEAST RL7B_YEAST SEY1_YEAST IF4E_YEAST AGM1_YEAST TM108_YEAST UTP17_YEAST KPR1_YEAST HSP74_YEAST GRP78_YEAST HSP72_YEAST HSP71_YEAST OSH3_YEAST MGR1_YEAST PEM2_YEAST TCPA_YEAST TOM5_YEAST FCF2_YEAST SPT5_YEAST BLM10_YEAST SGN1_YEAST KTR3_YEAST UBP1_YEAST RCK2_YEAST SAC7_YEAST NCB1_YEAST PRTB_YEAST KRE2_YEAST NDH1_YEAST RPAB2_YEAST VA0D_YEAST PP2B2_YEAST RCL1_YEAST RS10A_YEAST NEP1_YEAST BBC1_YEAST UTP9_YEAST TMN3_YEAST TRFE_HUMAN_UPS AST1_YEAST AST2_YEAST PGC1_YEAST MDM36_YEAST RPB11_YEAST MKT1_YEAST NOL10_YEAST RL35A_YEAST VATL1_YEAST OCA1_YEAST HGH1_YEAST SYNC_YEAST BRL1_YEAST YP199_YEAST DUS1_YEAST RM08_YEAST GAR1_YEAST QCR7_YEAST GDA1_YEAST NPL4_YEAST MOT3_YEAST DCPS_YEAST RS30A_YEAST BIM1_YEAST ACAC_YEAST LCB2_YEAST SEC62_YEAST DAS2_YEAST KTHY_YEAST PIN3_YEAST UGPA1_YEAST RKM4_YEAST GPI16_YEAST DGK1_YEAST RPA1_YEAST RPB1_YEAST BUD16_YEAST RL30_YEAST TBA1_YEAST TBA3_YEAST H2B1_YEAST RL6B_YEAST RL6A_YEAST TAF4_YEAST GLRX6_YEAST AIM2_YEAST PROF_YEAST YCP4_YEAST PST2_YEAST YFI6_YEAST ABP1_YEAST BPT1_YEAST PEP12_YEAST VTI1_YEAST TCPH_YEAST ENOPH_YEAST CAH1_HUMAN_UPS HRR25_YEAST KC13_YEAST SEG2_YEAST VPS35_YEAST ISW2_YEAST ISW1_YEAST RM51_YEAST RSC30_YEAST SPC72_YEAST RS23A_YEAST FKH1_YEAST ODC2_YEAST COPB2_YEAST SKT5_YEAST HEM3_YEAST FKS2_YEAST FKS1_YEAST ODP2_YEAST RHO3_YEAST MED8_YEAST SKY1_YEAST SRP54_YEAST ACS2_YEAST KRE9_YEAST SYV_YEAST HER1_YEAST GIP3_YEAST YM94_YEAST YPT32_YEAST YPT31_YEAST GLRX3_YEAST GLRX4_YEAST SHQ1_YEAST VID27_YEAST DOHH_YEAST SOL3_YEAST HMCS_YEAST CWC2_YEAST BZZ1_YEAST THO2_YEAST YG36_YEAST YP063_YEAST FAB1_YEAST NPY1_YEAST YG4I_YEAST SRP72_YEAST TRXB2_YEAST TRXB1_YEAST BET1_YEAST SSD1_YEAST HSF_YEAST SKN7_YEAST TR130_YEAST SRO7_YEAST RMD9_YEAST LYS12_YEAST SEC22_YEAST GTR2_YEAST CBF5_YEAST EF1G1_YEAST EF1G2_YEAST GPD1_YEAST GPD2_YEAST RPN13_YEAST RPN2_YEAST MET5_YEAST CDC10_YEAST PAH1_YEAST PMA1_YEAST APE3_YEAST PSA5_YEAST SLS1_YEAST BUD22_YEAST IDH1_YEAST SC61G_YEAST YIP4_YEAST SYWC_YEAST MNN9_YEAST YKD3A_YEAST UBP13_YEAST DUO1_YEAST NGL2_YEAST RL11A_YEAST RPA12_YEAST YBI1_YEAST UBL1_YEAST HST4_YEAST TRMB_YEAST PEX25_YEAST RPB7_YEAST EMP24_YEAST MTAP_YEAST AIM9_YEAST REI1_YEAST ETT1_YEAST RM23_YEAST RRP41_YEAST NOP19_YEAST DEF1_YEAST IMG1_YEAST DAP1_YEAST COPB_YEAST ANR2_YEAST RS19A_YEAST URA8_YEAST URA7_YEAST TIM9_YEAST PRP43_YEAST COX2_YEAST NFS1_YEAST SCS2_YEAST DFM1_YEAST COAD_YEAST SDHF4_YEAST SYH1_YEAST LSM8_YEAST RUVB1_YEAST MRN1_YEAST BAP2_YEAST UBP8_YEAST UTP6_YEAST SEC13_YEAST GPN3_YEAST DPB4_YEAST T2AG_YEAST PRS6B_YEAST PRS8_YEAST PRS10_YEAST ECM32_YEAST UTP14_YEAST RSE1_YEAST YD183_YEAST YP245_YEAST HOS3_YEAST UTP23_YEAST RIX1_YEAST SIM1_YEAST DPP3_YEAST YIK8_YEAST TWF1_YEAST GTS1_YEAST SLF1_YEAST SEC31_YEAST RU2A_YEAST IMP4_YEAST SMY2_YEAST MDHM_YEAST STT4_YEAST FCP1_YEAST RFA3_YEAST MVP1_YEAST GVP36_YEAST ARPC2_YEAST IF4B_YEAST YL361_YEAST NOP58_YEAST NOP56_YEAST CRH1_YEAST RT12_YEAST PSB4_YEAST CBK1_YEAST CDC48_YEAST NDK_YEAST MCK1_YEAST SRR1L_YEAST MIC26_YEAST DCP2_YEAST PRP8_YEAST RRP7_YEAST ATIF_YEAST WDR6_YEAST SF3B1_YEAST PTM1_YEAST AHP1_YEAST SA190_YEAST RPC6_YEAST ACO1_YEAST SIF2_YEAST SNZ2_YEAST CTR1_YEAST MAK21_YEAST YMH9_YEAST YOS1_YEAST TBB_YEAST SWI6_YEAST SNQ2_YEAST PDR15_YEAST PDR5_YEAST PYR1_YEAST CARB_YEAST RM39_YEAST RRS1_YEAST PLP2_YEAST TKT1_YEAST IOC2_YEAST PMT4_YEAST MTR10_YEAST LSB3_YEAST PHB1_YEAST SLA2_YEAST STF2_YEAST RHEB_YEAST UTP20_YEAST ROK1_YEAST RER1_YEAST IF4F1_YEAST IF4F2_YEAST CSK22_YEAST SCW10_YEAST MMM1_YEAST YGZ2_YEAST MEX67_YEAST TED1_YEAST NCBP1_YEAST VPS13_YEAST PDI_YEAST YM8F_YEAST RIR3_YEAST RIR1_YEAST APD1_YEAST NCPR_YEAST GSH1_YEAST PWP2_YEAST CKS1_YEAST PTH2_YEAST SCP1_YEAST DPOE_YEAST TRM5_YEAST IPI3_YEAST TIM16_YEAST PTI1_YEAST MUD2_YEAST REE1_YEAST GPX3_YEAST GPX2_YEAST TIM44_YEAST COG2_YEAST RT19_YEAST RL24B_YEAST RL24A_YEAST SYSC_YEAST SEC2_YEAST SDH3_YEAST RT28_YEAST MIC60_YEAST SHY1_YEAST YRA2_YEAST RL18A_YEAST CDC91_YEAST RPC3_YEAST YRB1_YEAST WHI2_YEAST MDN1_YEAST DUT_YEAST ATP12_YEAST NOP16_YEAST CYPD_YEAST ENT5_YEAST KRE6_YEAST TMA7_YEAST SRP14_YEAST IF1A_YEAST RUB1_YEAST EFR3_YEAST NOP9_YEAST NSP1_YEAST OTU2_YEAST SAM35_YEAST RS8A_YEAST CARA_YEAST PHA2_YEAST EIF3A_YEAST UBP10_YEAST UTP11_YEAST TOM22_YEAST YM17_YEAST NIT3_YEAST KYNU_YEAST IMB2_YEAST HLJ1_YEAST ERO1_YEAST TMA46_YEAST SMI1_YEAST GBP2_YEAST XRN2_YEAST TAF12_YEAST YM91_YEAST PSA2_YEAST IF5_YEAST PCL6_YEAST CCA1_YEAST FMP52_YEAST PPS1_YEAST YIP1_YEAST MYO5_YEAST MYO3_YEAST PSB1_YEAST TFC7_YEAST LCP5_YEAST OYE2_YEAST HST1_YEAST TSL1_YEAST H4_YEAST TAN1_YEAST PHO86_YEAST YO098_YEAST RPB4_YEAST SEC4_YEAST YPT6_YEAST DPH6_YEAST RM11_YEAST RNQ1_YEAST SIR2_YEAST ACA2_YEAST BMH2_YEAST BMH1_YEAST KPYK2_YEAST KPYK1_YEAST AP1B1_YEAST AVT1_YEAST GOR1_YEAST YP097_YEAST RPN10_YEAST PAN3_YEAST SPEE_YEAST NUP2_YEAST KPR5_YEAST MRP10_YEAST OSH7_YEAST OSH6_YEAST HRI1_YEAST SDHA_YEAST NADC_YEAST EFGM_YEAST TPM1_YEAST LONM_YEAST YK50_YEAST PBP4_YEAST DSS1_YEAST RT25_YEAST EMP46_YEAST PAM1_YEAST DCUP_YEAST MTF2_YEAST TRS20_YEAST WTM1_YEAST ERV46_YEAST RT107_YEAST YMN1_YEAST ARA1_YEAST SFT1_YEAST RL14A_YEAST RL14B_YEAST NOT3_YEAST PDR17_YEAST CLH_YEAST RS28A_YEAST COQ1_YEAST YMW4_YEAST EFM4_YEAST CBPY_YEAST CTK3_YEAST EI2BG_YEAST SEM1_YEAST ACK1_YEAST RIO2_YEAST ISC1_YEAST HSP26_YEAST EUG1_YEAST VATL2_YEAST YM14_YEAST NPC2_YEAST PUR92_YEAST PUR91_YEAST SPT6_YEAST MYO2_YEAST MYO4_YEAST SMC3_YEAST MSRA_YEAST NUP84_YEAST PUF6_YEAST SMD2_YEAST DHE2_YEAST RT07_YEAST HCS1_YEAST PIN4_YEAST RL37B_YEAST RL37A_YEAST GLE2_YEAST PGA3_YEAST YG5B_YEAST ARP9_YEAST MDJ1_YEAST GCSP_YEAST VPS29_YEAST PEX29_YEAST TREA_YEAST DMA1_YEAST OLA1_YEAST MIG1_YEAST VPS75_YEAST GNT1_YEAST GBLP_YEAST DUS2_YEAST SWI3_YEAST RFC5_YEAST NUM1_YEAST COPZ_YEAST FBRL_YEAST BGL2_YEAST YCU1_YEAST H1_YEAST DOP1_YEAST RPA34_YEAST GAS1_YEAST TIM13_YEAST SUCA_YEAST TOF1_YEAST ERG26_YEAST METW_YEAST NMD5_YEAST ENT1_YEAST PSK1_YEAST PMT1_YEAST PRP19_YEAST DBP10_YEAST YMRF1_YEAST RT16_YEAST NOP6_YEAST RM27_YEAST MNP1_YEAST TRX3_YEAST TIM22_YEAST YGI2_YEAST CDC14_YEAST RS11A_YEAST HXT4_YEAST GLRX7_YEAST RL8B_YEAST RL8A_YEAST YKH5_YEAST PEA2_YEAST HBA_HUMAN_UPS CHS1_YEAST NSL1_YEAST GET2_YEAST RPM2_YEAST COXM1_YEAST COX13_YEAST MPE1_YEAST RS4A_YEAST AFG1_YEAST COA4_YEAST VHR1_YEAST RBA50_YEAST TDA10_YEAST RGA2_YEAST MSMO_YEAST RPN1_YEAST SNF6_YEAST RSC6_YEAST HIS4_YEAST LNP_YEAST CSK2C_YEAST TRA1_YEAST FKBP2_YEAST DHAS_YEAST DDP1_YEAST RL20A_YEAST YG5L_YEAST SEC72_YEAST UBX5_YEAST SS120_YEAST GPT2_YEAST PP2C3_YEAST PP2C2_YEAST GSHB_YEAST SQT1_YEAST DIM1_YEAST IML1_YEAST TIM50_YEAST YCH1_YEAST POP5_YEAST DUG1_YEAST NU157_YEAST SAM50_YEAST AIM18_YEAST CEX1_YEAST YD514_YEAST VTA1_YEAST SEC9_YEAST PMG1_YEAST TRM2_YEAST GYS1_YEAST GIR2_YEAST HEM4_YEAST KGUA_YEAST RSC3_YEAST PSD10_YEAST SED5_YEAST MTC1_YEAST NOP3_YEAST RM24_YEAST ARP6_YEAST RNA14_YEAST MSH2_YEAST MED15_YEAST DJP1_YEAST GRE2_YEAST COM1_YEAST CDC11_YEAST YL257_YEAST AP1G1_YEAST NSG2_YEAST CSL4_YEAST TBP_YEAST AKL1_YEAST YEW7_YEAST LUC7_YEAST BUD23_YEAST IDH2_YEAST EAP1_YEAST YP091_YEAST RT31_YEAST RSR1_YEAST UBP14_YEAST YHS7_YEAST BUD32_YEAST DBP7_YEAST EFM1_YEAST HEMH_YEAST HSP60_YEAST PDC2_YEAST APT2_YEAST LIP1_YEAST MKAR_YEAST RUD3_YEAST ALG11_YEAST POB3_YEAST IMG2_YEAST ELP1_YEAST BAR1_YEAST HXT2_YEAST AP3B_YEAST PSA6_YEAST TSC10_YEAST OST1_YEAST ERP4_YEAST TTL_YEAST BMT5_YEAST NBP35_YEAST VPS17_YEAST SBA1_YEAST RAF_YEAST POC2_YEAST SDO1_YEAST HACD_YEAST PSB5_YEAST IPYR_YEAST YG1B_YEAST SEC6_YEAST THI7_YEAST AXL2_YEAST VATC_YEAST ECM14_YEAST CCS1_YEAST HSL1_YEAST CET1_YEAST MIC27_YEAST RL3_YEAST HIS1_YEAST MG101_YEAST RL33B_YEAST RL33A_YEAST MSC6_YEAST COX5A_YEAST RPN14_YEAST AIM24_YEAST YNL5_YEAST YNF0_YEAST NKP1_YEAST MVD1_YEAST VOA1_YEAST PBP1_YEAST DAD1_YEAST TRM9_YEAST PUR3_YEAST IPB2_YEAST RM33_YEAST YO283_YEAST TRNL_YEAST GCY1_YEAST YPR1_YEAST TIM10_YEAST CTF4_YEAST GNP1_YEAST CNS1_YEAST CSC1_YEAST TR112_YEAST YGC4_YEAST RT13_YEAST DOT5_YEAST EI2BD_YEAST UBC13_YEAST PFD2_YEAST SYUG_HUMAN_UPS PPIA_HUMAN_UPS IDHC_YEAST IDHP_YEAST IDI1_YEAST NACA_YEAST RQC2_YEAST NAM9_YEAST MAL11_YEAST SIL1_YEAST PANK_YEAST RL4A_YEAST RL4B_YEAST YC16_YEAST DLD1_YEAST CAB3_YEAST RDH54_YEAST RAS2_YEAST X3HAO_YEAST EMI2_YEAST NBP2_YEAST CHIT_YEAST ATP7_YEAST YNU8_YEAST DTD_YEAST TRM61_YEAST RRP14_YEAST YI002_YEAST UPPS_YEAST ALDH6_YEAST CLA4_YEAST ELO2_YEAST ORM2_YEAST ORM1_YEAST UTP7_YEAST EMW1_YEAST MET22_YEAST RS24A_YEAST RL28_YEAST ERG1_YEAST TRFL_HUMAN_UPS ANT1_YEAST TPS3_YEAST NAT3_YEAST PUF3_YEAST UBX2_YEAST YMY9_YEAST ATPA_YEAST EPS1_YEAST RPN8_YEAST SUS1_YEAST ATX1_YEAST NM111_YEAST IMH1_YEAST YN8O_YEAST RFC2_YEAST PTA1_YEAST ATPK_YEAST SEC24_YEAST SFB2_YEAST PP12_YEAST POP2_YEAST ADH6_YEAST FLC1_YEAST COG6_YEAST G6PD_YEAST SYKC_YEAST PPX1_YEAST SKG6_YEAST NOC3_YEAST ADD37_YEAST YBD6_YEAST ECM1_YEAST MCD4_YEAST AIM21_YEAST STH1_YEAST PSB2_YEAST INP54_YEAST EI2BA_YEAST SPB4_YEAST QCR1_YEAST SEC10_YEAST GLU2A_YEAST MPP6_YEAST ETFD_YEAST ALBU_HUMAN_UPS THI80_YEAST LOC1_YEAST RAD23_YEAST SPC3_YEAST TRPG_YEAST YN034_YEAST T2EA_YEAST EAF6_YEAST KMO_YEAST GBB_YEAST ATC5_YEAST ATC4_YEAST HPM1_YEAST SUB1_YEAST PPCS_YEAST RLA3_YEAST LCF1_YEAST LCF3_YEAST LCF4_YEAST PRI1_YEAST DBP4_YEAST PLR1_YEAST YME2_YEAST MON2_YEAST ACBP_YEAST ARE2_YEAST CHS5_YEAST FRA2_YEAST SSZ1_YEAST ACL4_YEAST HEK2_YEAST SEC66_YEAST RL25_YEAST CTR86_YEAST CAPZB_YEAST RDL1_YEAST RM02_YEAST SPC42_YEAST MSN4_YEAST CISY1_YEAST EXG1_YEAST FYV4_YEAST SAS10_YEAST ARF1_YEAST ARF2_YEAST RPN5_YEAST HIS8_YEAST SMT3_YEAST NNT1_YEAST TIP41_YEAST RRP4_YEAST ERG8_YEAST DID2_YEAST NOB1_YEAST YNB0_YEAST YRB30_YEAST MED5_YEAST PPID_YEAST THI4_YEAST CWH43_YEAST PRP5_YEAST ALB1_YEAST RTG2_YEAST YP098_YEAST YJF5_YEAST YB91_YEAST GCST_YEAST ANP1_YEAST SBE22_YEAST ARGD_YEAST GPA1_YEAST SRPR_YEAST FIP1_YEAST DNPEP_YEAST ARP3_YEAST HST2_YEAST PPT1_YEAST CBPS_YEAST RSN1_YEAST XPO1_YEAST RAP1_YEAST FCY1_YEAST CHAC_YEAST TKT2_YEAST IOC3_YEAST SYTC_YEAST NU188_YEAST NIP7_YEAST IST1_YEAST COQ5_YEAST VPS9_YEAST RASH_HUMAN_UPS NMA1_YEAST TPO3_YEAST RM49_YEAST TRS33_YEAST KIME_YEAST MCM7_YEAST FEN1_YEAST FSH2_YEAST ERP1_YEAST RPD3_YEAST VAN1_YEAST COX9_YEAST SNU23_YEAST AIM6_YEAST KHSE_YEAST MED21_YEAST AB140_YEAST RS16A_YEAST SCM4_YEAST YN8B_YEAST PXL1_YEAST PHO90_YEAST TCB2_YEAST IF2A_YEAST CDC73_YEAST EIF3B_YEAST PAP2_YEAST LKHA4_YEAST BXI1_YEAST BRE1_YEAST TOD6_YEAST SAC1_YEAST TCPE_YEAST RPF1_YEAST IF5A1_YEAST CAF16_YEAST AP3S_YEAST NQO1_HUMAN_UPS OSTB_YEAST SIS2_YEAST BEM4_YEAST NOP53_YEAST YP089_YEAST SOK1_YEAST KAPS_YEAST EMC4_YEAST PESC_YEAST TSR4_YEAST TPA1_YEAST METX_YEAST UTP18_YEAST PAA1_YEAST NU120_YEAST EAF3_YEAST ESF1_YEAST SOP4_YEAST HAS1_YEAST PAN1_YEAST DCW1_YEAST VATG_YEAST PFD6_YEAST TIM23_YEAST KTR4_YEAST PURA_YEAST MCM4_YEAST YOP1_YEAST AK_YEAST YK023_YEAST DHR2_YEAST SAHH_YEAST AIM3_YEAST CDC42_YEAST P5CR_YEAST YTM1_YEAST SEN1_YEAST TFS2_YEAST UBA4_YEAST MAK5_YEAST CORO_YEAST PBS2_YEAST RT35_YEAST DSF2_YEAST SC61A_YEAST YET3_YEAST RPA2_YEAST HNT1_YEAST PNO1_YEAST MAP1_YEAST ENT3_YEAST TPIS_YEAST LSB1_YEAST CAF40_YEAST TF2B_YEAST HXKG_YEAST PANE_YEAST SN114_YEAST TRPD_YEAST DXO_YEAST ATC1_YEAST RM09_YEAST ILVB_YEAST YBU6_YEAST UBP2_YEAST ELP5_YEAST RS6A_YEAST YFL5_YEAST MLC1_YEAST GID7_YEAST SDS24_YEAST KES1_YEAST BDF1_YEAST RL16B_YEAST RL16A_YEAST PYRC_YEAST DUG2_YEAST UME1_YEAST GPI17_YEAST ALAM_YEAST RBG1_YEAST AIM19_YEAST RPAC2_YEAST X2AAA_YEAST YKT6_YEAST CALM_YEAST APA1_YEAST SDT1_YEAST ETFA_YEAST VHS2_YEAST SA185_YEAST SIN3_YEAST NUP57_YEAST TCPB_YEAST RSC7_YEAST CYP7_YEAST TAF5_YEAST HIS5_YEAST RS27B_YEAST FKBP4_YEAST FKBP3_YEAST ITPA_YEAST MPD2_YEAST QCR8_YEAST FADH_YEAST ZIM17_YEAST YND5_YEAST TMA16_YEAST VNX1_YEAST RLA0_YEAST CUE4_YEAST GCN20_YEAST DED1_YEAST DBP2_YEAST SEC17_YEAST REB1_YEAST SKI8_YEAST MRS1_YEAST FRDA_YEAST CDC24_YEAST SFT2_YEAST SEC63_YEAST LEUC_YEAST NTF2_YEAST SPB1_YEAST GLT1_YEAST SFH1_YEAST BFR2_YEAST PET18_YEAST PUR7_YEAST IWS1_YEAST POM33_YEAST RRP1_YEAST DDR48_YEAST ERG5_YEAST CHMU_YEAST FAS2_YEAST PMU1_YEAST GYP5_YEAST PHO84_YEAST EF1A_YEAST SMD3_YEAST FAT1_YEAST NOP13_YEAST HSC82_YEAST HSP82_YEAST HSP7Q_YEAST RS20_YEAST REXO4_YEAST MGR2_YEAST ARA2_YEAST ESS1_YEAST RRP45_YEAST RIB3_YEAST FET3_YEAST EIF3I_YEAST YGK1_YEAST ARB1_YEAST LSM2_YEAST MTR3_YEAST COX6_YEAST RS29A_YEAST RS29B_YEAST SERB_YEAST NCB2_YEAST GCH1_YEAST MLP1_YEAST RNA1_YEAST RPAB3_YEAST SYFA_YEAST MAM3_YEAST TOS1_YEAST EMC1_YEAST ATPO_YEAST FRMSR_YEAST OST2_YEAST TCTP_YEAST NOG1_YEAST BMT6_YEAST DPOA2_YEAST OKP1_YEAST THP2_YEAST DPO5_YEAST THIL_YEAST PGK_YEAST RRP42_YEAST VATD_YEAST YEY6_YEAST ZUO1_YEAST UBA1_YEAST OAT_YEAST GYP2_YEAST DET1_YEAST RUVB2_YEAST ARPC3_YEAST GIS2_YEAST YKJ1_YEAST SEC14_YEAST TSR1_YEAST PUR4_YEAST BUD2_YEAST PRA1_YEAST SYLM_YEAST REXO1_YEAST ECM33_YEAST ASND1_YEAST SEC23_YEAST RRP8_YEAST PANB_YEAST YPS1_YEAST MMF1_YEAST SDC1_YEAST ACH1_YEAST AP3M_YEAST BRE5_YEAST LCL2_YEAST PFD3_YEAST MAK16_YEAST ATPB_YEAST FYV8_YEAST MOT1_YEAST DLD3_YEAST DLD2_YEAST YO238_YEAST PGM1_YEAST PGM2_YEAST VPH1_YEAST YBQ6_YEAST YKK0_YEAST CRH2_YEAST UTP15_YEAST CYPH_YEAST FES1_YEAST CG121_YEAST HSP42_YEAST RSC4_YEAST PDR1_YEAST RL29_YEAST ARP7_YEAST KPC1_YEAST SOL4_YEAST LEO1_YEAST KTR1_YEAST STM1_YEAST RL38_YEAST PP2A1_YEAST ALG1_YEAST CUE1_YEAST ALO_YEAST GPI8_YEAST SSF2_YEAST MCM16_YEAST MDG1_YEAST SHB17_YEAST SP110_YEAST CST26_YEAST RNZ_YEAST EXO70_YEAST CY1_YEAST SFB3_YEAST TMN1_YEAST YKG3_YEAST ZPR1_YEAST BOI2_YEAST BOB1_YEAST YG3A_YEAST DBP8_YEAST KAR_YEAST FOLE_YEAST SUR2_YEAST VPS45_YEAST INO80_YEAST FOL1_YEAST NOC4_YEAST RIM1_YEAST CNM67_YEAST NU145_YEAST NCL1_YEAST CCPR_YEAST XPT1_YEAST SYC_YEAST PUS3_YEAST RM06_YEAST MED16_YEAST PIS_YEAST ERG2_YEAST MUK1_YEAST MOG1_YEAST SYYC_YEAST NOP10_YEAST HXT3_YEAST PUT2_YEAST YHM2_YEAST RS25A_YEAST X6PGD1_YEAST X6PGD2_YEAST RT04_YEAST CHO2_YEAST MRC1_YEAST NMD2_YEAST MTD1_YEAST GLGB_YEAST MBF1_YEAST UBC9_YEAST CYB5_YEAST ADK_YEAST RM15_YEAST SYYM_YEAST KIN4_YEAST VDAC1_YEAST NIC96_YEAST RL12A_YEAST PFF1_YEAST ILV5_YEAST DAP2_YEAST FDFT_YEAST THIO_HUMAN_UPS BUR1_YEAST TAF2_YEAST MAS5_YEAST ELP2_YEAST MXR2_YEAST COA1_YEAST ENB1_YEAST STI1_YEAST MET10_YEAST NHP2_YEAST YGP1_YEAST CCC1_YEAST TSA1_YEAST HEM1_YEAST SAD1_YEAST RPC4_YEAST YRB2_YEAST URE2_YEAST AGE2_YEAST YN60_YEAST SAM4_YEAST SIP5_YEAST YRO2_YEAST MRH1_YEAST DDI1_YEAST MOB2_YEAST YP148_YEAST IST2_YEAST RTG3_YEAST MRX1_YEAST QCR2_YEAST SFH5_YEAST RS5_YEAST PAF1_YEAST SEC11_YEAST SFM1_YEAST UTP12_YEAST AHA1_YEAST ODPX_YEAST DNA2_YEAST PDX3_YEAST SLM4_YEAST KIN1_YEAST AVL9_YEAST YD144_YEAST RRP5_YEAST RS15_YEAST YBM6_YEAST SMK1_YEAST SLT2_YEAST HOG1_YEAST TCB3_YEAST TBCA_YEAST IF2B_YEAST VTC4_YEAST PMM_YEAST RPN11_YEAST MET3_YEAST FCY2_YEAST HRB1_YEAST GAS5_YEAST WHI3_YEAST PNG1_YEAST DPP1_YEAST REG1_YEAST PSA3_YEAST IF6_YEAST NSR1_YEAST TRM6_YEAST GLC8_YEAST BUD20_YEAST SODC_HUMAN_UPS CDC37_YEAST DSL1_YEAST PEX14_YEAST OXA1_YEAST LSM6_YEAST PRM8_YEAST X2A5D_YEAST NRK1_YEAST RAD51_YEAST SEC39_YEAST KA122_YEAST TIM54_YEAST IMB3_YEAST ETR1_YEAST SOL2_YEAST MHR1_YEAST LCMT1_YEAST RER2_YEAST VATA_YEAST LYS4_YEAST TCPZ_YEAST YL419_YEAST AAP1_YEAST APE2_YEAST HEL2_YEAST CLPX_YEAST SHE10_YEAST NCBP2_YEAST VPS33_YEAST SPSY_YEAST NCB5R_YEAST RIR4_YEAST PEP5_YEAST DEP1_YEAST GGA2_YEAST RFA1_YEAST YJV3_YEAST MRT4_YEAST OCH1_YEAST UBP6_YEAST FSH3_YEAST BECN1_YEAST UTP4_YEAST GPN1_YEAST NU133_YEAST RLA4_YEAST ISU1_YEAST DPB2_YEAST RHO1_YEAST PO152_YEAST YD391_YEAST RTPT_YEAST PHB2_YEAST IXR1_YEAST UTP21_YEAST RM03_YEAST VTS1_YEAST SGT1_YEAST NUP60_YEAST STE14_YEAST NSE1_YEAST YJ9J_YEAST RPF2_YEAST SKG3_YEAST C1TC_YEAST C1TM_YEAST PNPH_YEAST RT01_YEAST STE23_YEAST CYB2_YEAST UBC6_YEAST ZRC1_YEAST TCD1_YEAST T2FA_YEAST NBA1_YEAST FUN30_YEAST RT10_YEAST SUB2_YEAST YPT7_YEAST BNA3_YEAST XKS1_YEAST NHP6A_YEAST RBX1_YEAST BCP1_YEAST GLRX1_YEAST CUZ1_YEAST MSC3_YEAST GPDM_YEAST LHS1_YEAST MRH4_YEAST PROA_YEAST KEX1_YEAST NAT1_YEAST YP225_YEAST NDOR1_YEAST MTND_YEAST YB92_YEAST YG34_YEAST TAF9_YEAST ADE_YEAST SPA2_YEAST DCAM_YEAST MCR1_YEAST MCP2_YEAST RSSA2_YEAST YFI8_YEAST STE20_YEAST HOC1_YEAST HCH1_YEAST PCC1_YEAST AIP1_YEAST PRTD_YEAST AFG2_YEAST MSS51_YEAST EMP47_YEAST FMP41_YEAST TAL1_YEAST SUCB_YEAST ERG27_YEAST PCP1_YEAST ARC1_YEAST PMT2_YEAST PMT3_YEAST CAJ1_YEAST KAE1_YEAST MDL1_YEAST VID22_YEAST KISH_YEAST UFD4_YEAST MDM38_YEAST UBR1_YEAST IMA1_YEAST PNC1_YEAST MCE1_YEAST PUS7_YEAST RGD1_YEAST LTV1_YEAST UGO1_YEAST TOM20_YEAST SYDC_YEAST SRP68_YEAST RL9B_YEAST RL9A_YEAST ATC2_YEAST NAB2_YEAST RLA1_YEAST SEC18_YEAST VBA4_YEAST HAT1_YEAST BUD6_YEAST TRM3_YEAST ERV29_YEAST TIM14_YEAST BID_HUMAN_UPS PYC2_YEAST PYC1_YEAST APN1_YEAST PTR2_YEAST NPR1_YEAST RL17B_YEAST RL17A_YEAST POM34_YEAST HEH2_YEAST CTR9_YEAST FSF1_YEAST SNX3_YEAST RPB2_YEAST RS12_YEAST COXM2_YEAST AF9_YEAST IRC21_YEAST NOT4_YEAST RPC1_YEAST BRO1_YEAST COQ2_YEAST MTNA_YEAST FAT2_YEAST YCQ5_YEAST ATP10_YEAST VTC1_YEAST NOP14_YEAST MIX17_YEAST LYS1_YEAST RM19_YEAST RPP1_YEAST HFD1_YEAST TIP20_YEAST UGA2_YEAST RS7A_YEAST RS7B_YEAST SLY1_YEAST TBF1_YEAST MRX12_YEAST NAP1_YEAST RM28_YEAST URB1_YEAST RRP46_YEAST STB3_YEAST SPT7_YEAST SRP21_YEAST OSM1_YEAST TPM2_YEAST MSH6_YEAST KAD2_YEAST CFT1_YEAST CANB_YEAST SCS7_YEAST KRI1_YEAST TPN1_YEAST GET3_YEAST AIM29_YEAST SLM1_YEAST CDC3_YEAST PUN1_YEAST HNT2_YEAST LCB4_YEAST TAF10_YEAST HRK1_YEAST HTL1_YEAST ESF2_YEAST HBN1_YEAST ARO1_YEAST PLB1_YEAST TRPE_YEAST ODPA_YEAST SNF7_YEAST RS2_YEAST IVY1_YEAST DUS3_YEAST TRS31_YEAST YPK1_YEAST YPK2_YEAST NUP85_YEAST MLC2_YEAST COPG_YEAST SYQ_YEAST SVF1_YEAST RT08_YEAST YMC1_YEAST RL21A_YEAST RL21B_YEAST YIM1_YEAST ABF1_YEAST YHR2_YEAST IPI1_YEAST RT17_YEAST KCS1_YEAST YHI9_YEAST CYC8_YEAST EFM5_YEAST RL32_YEAST ACPM_YEAST NSA1_YEAST BOS1_YEAST PVH1_YEAST MSC7_YEAST FCF1_YEAST RPC8_YEAST NU192_YEAST MNN1_YEAST COQ9_YEAST ASF1_YEAST RLI1_YEAST RL39_YEAST SVL3_YEAST PBP2_YEAST ERG24_YEAST ALG2_YEAST COPD_YEAST YNS1_YEAST RRP15_YEAST RM34_YEAST NAA25_YEAST RIA1_YEAST GLO2_YEAST DNLI1_YEAST UTP8_YEAST NOT1_YEAST PXR1_YEAST SLX9_YEAST YET1_YEAST EFTU_YEAST OM45_YEAST PDE2_YEAST TRM44_YEAST RIM2_YEAST NFU1_YEAST MGDP1_YEAST RL10_YEAST GLRX5_YEAST SPT4_YEAST SMC1_YEAST ASSY_YEAST URK1_YEAST PRS7_YEAST PHO81_YEAST MAOM_YEAST LCB1_YEAST YM59_YEAST YPT1_YEAST DPH1_YEAST MCA1_YEAST RT05_YEAST END3_YEAST TDA3_YEAST ELO3_YEAST AMPD_YEAST ATG27_YEAST HPR1_YEAST YL363_YEAST SRO9_YEAST MIC19_YEAST TMN2_YEAST DOA1_YEAST SIA1_YEAST ADP1_YEAST RHO5_YEAST FIMB_YEAST ILV6_YEAST GRE3_YEAST NUP82_YEAST RT23_YEAST YA044_YEAST RFC3_YEAST ARX1_YEAST RN49_YEAST RT51_YEAST UBP15_YEAST RAV1_YEAST CHD1_YEAST ESC1_YEAST SRPB_YEAST RPE_YEAST ERF3_YEAST RPB9_YEAST NMD3_YEAST QCR10_YEAST SDS22_YEAST RM16_YEAST VPS21_YEAST YPT52_YEAST ALG12_YEAST ATM1_YEAST MIX23_YEAST GEF1_YEAST NOP4_YEAST CYSKL_YEAST RM25_YEAST RNA15_YEAST UFD1_YEAST TRX2_YEAST TRX1_YEAST CARP_YEAST CDC12_YEAST RPN9_YEAST SDHB_YEAST SCJ1_YEAST RL13B_YEAST SVP26_YEAST FHP_YEAST PUF4_YEAST TOP1_YEAST FUMH_YEAST TSC3_YEAST YG3L_YEAST SHE2_YEAST SA155_YEAST YG2W_YEAST RISA_YEAST BUD3_YEAST ARLY_YEAST SC6B1_YEAST HIS2_YEAST SHS1_YEAST FMP10_YEAST UTP25_YEAST NAT10_YEAST POF1_YEAST RL34A_YEAST LEM3_YEAST ARG56_YEAST RTN1_YEAST PAP_YEAST PSA7_YEAST ARO8_YEAST BCH1_YEAST YD061_YEAST SGPL_YEAST CD123_YEAST ARPC4_YEAST SYMC_YEAST VPS64_YEAST PSB6_YEAST DSD1_YEAST YFH6_YEAST SEC7_YEAST RPA14_YEAST EI2BE_YEAST OSH2_YEAST PER33_YEAST PHSG_YEAST PSS_YEAST RPN12_YEAST COPA_YEAST IMO32_YEAST NU170_YEAST NTM1_YEAST YOL19_YEAST ATP14_YEAST CBP6_YEAST GLU2B_YEAST SKI2_YEAST BUD21_YEAST RM31_YEAST GPA2_YEAST DHOM_YEAST HSP7E_YEAST HSP77_YEAST HSP12_YEAST UTH1_YEAST RM40_YEAST GPN2_YEAST IF4A_YEAST EIF3C_YEAST ORN_YEAST IBD2_YEAST YBT1_YEAST SNF1_YEAST IMB4_YEAST DSK2_YEAST LSB5_YEAST YHP7_YEAST RDL2_YEAST UTP22_YEAST CDC7_YEAST LSG1_YEAST PRS4_YEAST HOT1_YEAST NUF2_YEAST PIK1_YEAST ERP2_YEAST PAR32_YEAST RRP12_YEAST STT3_YEAST RFA2_YEAST UTP5_YEAST PHO88_YEAST PSB3_YEAST RGI1_YEAST DCC1_YEAST PDXH_YEAST NEW1_YEAST ZEO1_YEAST RRT14_YEAST DPOG_YEAST AYR1_YEAST SWD2_YEAST DCP1_YEAST ODO1_YEAST BBP_YEAST MCES_YEAST AIM41_YEAST NAB6_YEAST STV1_YEAST SHO1_YEAST PSP2_YEAST SYIM_YEAST REH1_YEAST MPPA_YEAST PUR1_YEAST SEG1_YEAST SYS1_YEAST MAM33_YEAST CLC1_YEAST TYR1_YEAST STE24_YEAST RLP24_YEAST SC160_YEAST NUG1_YEAST EMC5_YEAST UBC7_YEAST TCD2_YEAST HEM2_YEAST MTHR1_YEAST GRPE_YEAST ATP5E_YEAST F26_YEAST EI2BB_YEAST CISY2_YEAST PMT6_YEAST NAM7_YEAST RSA3_YEAST OSW7_YEAST ERV41_YEAST GLRX2_YEAST TUP1_YEAST T2EB_YEAST GLY1_YEAST RT102_YEAST CSM1_YEAST SCH9_YEAST GSTA1_HUMAN_UPS PRI2_YEAST DBP5_YEAST AP2A_YEAST LTN1_YEAST LDB19_YEAST IGO1_YEAST MRP8_YEAST UAP1_YEAST TOM70_YEAST NYV1_YEAST SCC3_YEAST MNT3_YEAST TPS1_YEAST HMF1_YEAST SYIC_YEAST COFI_YEAST NDC1_YEAST VPS24_YEAST MSN5_YEAST STU2_YEAST TBP7_YEAST TMEDA_YEAST GCN1_YEAST RPN6_YEAST TMA10_YEAST TAF14_YEAST PSA4_YEAST PABS_YEAST IMP3_YEAST ARMT1_YEAST GGC1_YEAST OM14_YEAST SDO1L_YEAST PP2C7_YEAST KEL1_YEAST FABD_YEAST ARP4_YEAST HBS1_YEAST RAD52_YEAST TECR_YEAST GEA2_YEAST YPP1_YEAST BRR2_YEAST FNTA_YEAST RPC5_YEAST AVT3_YEAST RM22_YEAST NUP49_YEAST PNPP_YEAST SYEC_YEAST YCQ6_YEAST ATP11_YEAST PUR8_YEAST PMG3_YEAST LOA1_YEAST ETFB_YEAST AP18B_YEAST SCW4_YEAST IL8_HUMAN_UPS SPC1_YEAST AKR1_YEAST NOP8_YEAST NIF3_YEAST TRM10_YEAST CIC1_YEAST ERG6_YEAST SPP1_YEAST RT18_YEAST YKH7_YEAST CYM1_YEAST BNI4_YEAST OAC1_YEAST CHS3_YEAST GET4_YEAST RM38_YEAST NIT2_YEAST UNG_YEAST DHH1_YEAST RT109_YEAST IMB1_YEAST TNA1_YEAST GLNA_YEAST RIB4_YEAST VIP1_YEAST XRN1_YEAST EIF3J_YEAST MGLL_YEAST RL4P_YEAST REP1_YEAST MTR4_YEAST RPN3_YEAST TAF6_YEAST PSA1_YEAST PUB1_YEAST SERC_YEAST EIF2A_YEAST URB2_YEAST SPT8_YEAST EDE1_YEAST ELP6_YEAST ACON_YEAST SNA2_YEAST OST6_YEAST EF1B_YEAST YVC1_YEAST LST8_YEAST DPH5_YEAST SIR1_YEAST CWH41_YEAST MGR3_YEAST NUC1_YEAST METE_YEAST YG5X_YEAST KTI12_YEAST RBG2_YEAST SRP40_YEAST VATH_YEAST RHC31_YEAST YB029_YEAST NSA2_YEAST HOSC_YEAST HOSM_YEAST MLP2_YEAST SYFB_YEAST YIV5_YEAST RIX7_YEAST EMC2_YEAST MPG1_YEAST SUMO1_HUMAN_UPS MPP10_YEAST CCL1_YEAST H3_YEAST G6PI_YEAST GAS3_YEAST SYO1_YEAST CDC25_YEAST RMT2_YEAST NOT5_YEAST CDS1_YEAST SAP30_YEAST B2MG_HUMAN_UPS CDC53_YEAST SYG_YEAST PEX11_YEAST OTU1_YEAST PAN2_YEAST TPO1_YEAST MCM5_YEAST DYL1_YEAST NNRE_YEAST RGD2_YEAST RPIA_YEAST PWP1_YEAST YD476_YEAST PYRD_YEAST CH10_YEAST EDC3_YEAST LHP1_YEAST BMS1_YEAST MNN10_YEAST SSBP1_YEAST MAP2_YEAST YCFI_YEAST GEP7_YEAST RSC8_YEAST YM71_YEAST SLA1_YEAST X2ABA_YEAST MSO1_YEAST PABP_YEAST ORT1_YEAST CSK21_YEAST UBX7_YEAST ATPF_YEAST UBP3_YEAST SEC1_YEAST BEM2_YEAST TMA17_YEAST SGD1_YEAST CUE5_YEAST RTF1_YEAST GCSH_YEAST RPAB4_YEAST HMO1_YEAST RCN2_YEAST NADE_YEAST DPM1_YEAST RE107_YEAST NU159_YEAST COX15_YEAST NUP1_YEAST AIM17_YEAST MDM35_YEAST ASPG1_YEAST NRP1_YEAST NOG2_YEAST HEM6_YEAST GLE1_YEAST GFA1_YEAST PSB7_YEAST RSP5_YEAST TYW1_YEAST PGA2_YEAST ARP8_YEAST LAS17_YEAST UB2E1_HUMAN_UPS SNU56_YEAST ECT1_YEAST QCR6_YEAST PTP1_YEAST TIM21_YEAST YCE2_YEAST LAA1_YEAST NTE1_YEAST GRH1_YEAST RT24_YEAST PGTB2_YEAST PP2B1_YEAST BET3_YEAST CAB5_YEAST SHE3_YEAST KRR1_YEAST HMX1_YEAST CYAA_YEAST BZRD_YEAST KICH_YEAST YHK5_YEAST DBP9_YEAST YNK8_YEAST SKO1_YEAST SNF5_YEAST CSK2B_YEAST OMS1_YEAST CWC22_YEAST PHO91_YEAST PUS4_YEAST CYS3_YEAST STB1_YEAST DOA10_YEAST MYO1_YEAST YEH1_YEAST PIB2_YEAST ELP3_YEAST BLH1_YEAST OST3_YEAST DHYS_YEAST TOP2_YEAST MDHP_YEAST RFS1_YEAST TMC1_YEAST CDC1_YEAST COX12_YEAST COG8_YEAST TMA23_YEAST FPPS_YEAST MRD1_YEAST MCFS2_YEAST RRP43_YEAST MOD5_YEAST RL5_YEAST SC6B2_YEAST ALF_YEAST RMAR_YEAST UBX4_YEAST DCS2_YEAST ARGI_YEAST SEC15_YEAST YL287_YEAST TSR2_YEAST DAD3_YEAST COPE_YEAST ARO9_YEAST FRDS_YEAST GLO3_YEAST BRX1_YEAST TGL1_YEAST BUG1_YEAST NOT2_YEAST PDAT_YEAST PCY1_YEAST PDR16_YEAST PANC_YEAST MID2_YEAST VPS4_YEAST VATE_YEAST PFD4_YEAST TAU_HUMAN_UPS MCM2_YEAST AVT7_YEAST YHT8_YEAST CAF20_YEAST NRD1_YEAST UBA2_YEAST ERG3_YEAST XPOT_YEAST AP3D_YEAST IF2P_YEAST CSE1_YEAST TEX1_YEAST ELF1_YEAST ATP9_YEAST YAR1_YEAST SMD1_YEAST SCD6_YEAST DPH2_YEAST RM35_YEAST RPOM_YEAST CSR1_YEAST CATA_HUMAN_UPS CASP_YEAST GDIR_YEAST POC4_YEAST YL413_YEAST RT106_YEAST RRP9_YEAST RIB1_YEAST EIF3G_YEAST PPN1_YEAST AROC_YEAST COX4_YEAST MMS2_YEAST CAP_YEAST DOM34_YEAST VPS74_YEAST RPAB1_YEAST ISN1_YEAST RFC4_YEAST RSM28_YEAST ECM25_YEAST MS116_YEAST FLC3_YEAST YKR18_YEAST ARL1_YEAST EMI1_YEAST CHS7_YEAST BUD31_YEAST PRK1_YEAST RM32_YEAST THI3_YEAST YG169_YEAST SYHC_HUMAN_UPS PEP3_YEAST RMD5_YEAST MRX9_YEAST ASG1_YEAST FOB1_YEAST RL7A_YEAST NPC1_YEAST TOR1_YEAST MSL1_YEAST NAM8_YEAST THI73_YEAST LEP_HUMAN_UPS PDR12_YEAST NAR1_YEAST ERJ5_YEAST WWM1_YEAST MOB1_YEAST LYSC_HUMAN_UPS ENT2_YEAST HDA1_YEAST LAC1_YEAST NUP53_YEAST PEX1_YEAST MSI1_YEAST TFC1_YEAST CPT1_YEAST FUB1_YEAST GIP4_YEAST YM11_YEAST KEL3_YEAST ATF2_YEAST COX17_YEAST YB126_YEAST SYTM_YEAST PRDX1_HUMAN_UPS POP6_YEAST SYPM_YEAST ARL3_YEAST PUS6_YEAST PEP8_YEAST DCOR_YEAST ADA2_YEAST PST1_YEAST RIFK_YEAST YL326_YEAST MED6_YEAST YKC3_YEAST AP18A_YEAST INA22_YEAST FPK1_YEAST ALG5_YEAST RTR1_YEAST TBG_YEAST HUB1_YEAST YP114_YEAST COX11_YEAST ANXA5_HUMAN_UPS VAM3_YEAST WHI4_YEAST YBY7_YEAST RSC1_YEAST FRE7_YEAST MSN2_YEAST YIQ9_YEAST PEX30_YEAST AP1M1_YEAST TOM7_YEAST SQS1_YEAST GPT1_YEAST EGF_HUMAN_UPS YJ81_YEAST BCH2_YEAST NAA35_YEAST PCF11_YEAST YG1D_YEAST ENG1_YEAST MTHR2_YEAST MRM1_YEAST MPH1_YEAST CAH2_HUMAN_UPS ALDH3_YEAST NQO2_HUMAN_UPS YFH7_YEAST JSN1_YEAST YK03_YEAST UPS2_YEAST YSC84_YEAST SWA2_YEAST BPL1_YEAST RCM1_YEAST FZO1_YEAST COG3_YEAST KTR7_YEAST MED2_YEAST IES2_YEAST PET8_YEAST IFNG_HUMAN_UPS RUP1_YEAST YL032_YEAST TGL4_YEAST PRR1_YEAST RSM18_YEAST GSTP1_HUMAN_UPS UBE2C_HUMAN_UPS GBG_YEAST CDC31_YEAST SYC1_YEAST GRR1_YEAST LAM6_YEAST BUD17_YEAST CDC20_YEAST RNH2B_YEAST YMZ2_YEAST HIT1_YEAST BIOB_YEAST PNT1_YEAST IES3_YEAST MNR2_YEAST CRP_HUMAN_UPS YL460_YEAST NEDD8_HUMAN_UPS OYE3_YEAST LALBA_HUMAN_UPS TAP42_YEAST TYW4_YEAST BUD7_YEAST NAA30_YEAST VPS27_YEAST CO5_HUMAN_UPS ACF4_YEAST IGF2_HUMAN_UPS SSF1_YEAST PMIP_YEAST CYB5_HUMAN_UPS MYG_HUMAN_UPS RET4_HUMAN_UPS GYL1_YEAST PSK2_YEAST TNFA_HUMAN_UPS RT27_YEAST UBC9_HUMAN_UPS RS27A_HUMAN_UPS ADH5_YEAST inj1_100amol inj2_100amol inj3_100amol inj4_100amol inj1_10amol inj2_10amol inj3_10amol inj4_10amol inj1_10fmol inj2_10fmol inj3_10fmol inj4_10fmol inj1_1fmol inj2_1fmol inj3_1fmol inj4_1fmol inj1_250amol inj2_250amol inj3_250amol inj4_250amol inj1_25fmol inj2_25fmol inj3_25fmol inj4_25fmol inj1_500amol inj2_500amol inj3_500amol inj4_500amol inj1_50amol inj2_50amol inj3_50amol inj4_50amol inj1_50fmol inj2_50fmol inj3_50fmol inj4_50fmol inj1_5fmol inj2_5fmol inj3_5fmol inj4_5fmol 5 6 7 8 9 log_intensity Save figure


50fmol-25fmol
-2 -1 0 1 2 5 6 7 8 9 10 log maximum intensity log2(abs(fc)) MA plot Save figure

ALBU_HUMAN_UPS ANT3_HUMAN_UPS ANXA5_HUMAN_UPS B2MG_HUMAN_UPS BID_HUMAN_UPS CAH1_HUMAN_UPS CAH2_HUMAN_UPS CATA_HUMAN_UPS CO5_HUMAN_UPS CRP_HUMAN_UPS CYB5_HUMAN_UPS CYC_HUMAN_UPS EAF3_YEAST EGF_HUMAN_UPS FABPH_HUMAN_UPS GELS_HUMAN_UPS GSTA1_HUMAN_UPS HBA_HUMAN_UPS HBB_HUMAN_UPS IFNG_HUMAN_UPS IGF2_HUMAN_UPS IL8_HUMAN_UPS KCRM_HUMAN_UPS LALBA_HUMAN_UPS LEP_HUMAN_UPS LYSC_HUMAN_UPS MYG_HUMAN_UPS NEDD8_HUMAN_UPS NQO1_HUMAN_UPS NQO2_HUMAN_UPS PDGFB_HUMAN_UPS PPIA_HUMAN_UPS PRDX1_HUMAN_UPS RASH_HUMAN_UPS RET4_HUMAN_UPS RL9A_YEAST RL9B_YEAST RPC8_YEAST RS27A_HUMAN_UPS SUMO1_HUMAN_UPS SYHC_HUMAN_UPS SYUG_HUMAN_UPS TAU_HUMAN_UPS TEC1_YEAST THIO_HUMAN_UPS TNFA_HUMAN_UPS TRFE_HUMAN_UPS TRFL_HUMAN_UPS UB2E1_HUMAN_UPS UBC9_HUMAN_UPS UBE2C_HUMAN_UPS 0 2 4 -2 -1 0 1 2 log2(fc) -log10(qval) Save figure

RS27A_HUMAN_UPS GELS_HUMAN_UPS KCRM_HUMAN_UPS PDGFB_HUMAN_UPS ANT3_HUMAN_UPS HBB_HUMAN_UPS FABPH_HUMAN_UPS CAH2_HUMAN_UPS CRP_HUMAN_UPS SYHC_HUMAN_UPS TEC1_YEAST NQO2_HUMAN_UPS CYC_HUMAN_UPS TRFE_HUMAN_UPS CAH1_HUMAN_UPS NEDD8_HUMAN_UPS LEP_HUMAN_UPS IGF2_HUMAN_UPS LYSC_HUMAN_UPS HBA_HUMAN_UPS SYUG_HUMAN_UPS PPIA_HUMAN_UPS LALBA_HUMAN_UPS TRFL_HUMAN_UPS ALBU_HUMAN_UPS CYB5_HUMAN_UPS RASH_HUMAN_UPS PRDX1_HUMAN_UPS NQO1_HUMAN_UPS EAF3_YEAST IFNG_HUMAN_UPS THIO_HUMAN_UPS UBC9_HUMAN_UPS RL9B_YEAST RL9A_YEAST BID_HUMAN_UPS TNFA_HUMAN_UPS RPC8_YEAST ANXA5_HUMAN_UPS MYG_HUMAN_UPS CO5_HUMAN_UPS GSTA1_HUMAN_UPS IL8_HUMAN_UPS SUMO1_HUMAN_UPS B2MG_HUMAN_UPS UBE2C_HUMAN_UPS UB2E1_HUMAN_UPS EGF_HUMAN_UPS RET4_HUMAN_UPS TAU_HUMAN_UPS CATA_HUMAN_UPS inj1_25fmol inj2_25fmol inj3_25fmol inj4_25fmol inj1_50fmol inj2_50fmol inj3_50fmol inj4_50fmol 6 7 8 9 log_intensity Save figure

50fmol-500amol
-2.5 0.0 2.5 5.0 5 6 7 8 9 10 log maximum intensity log2(abs(fc)) MA plot Save figure

ALBU_HUMAN_UPS ANT3_HUMAN_UPS ANXA5_HUMAN_UPS B2MG_HUMAN_UPS BID_HUMAN_UPS CAH1_HUMAN_UPS CAH2_HUMAN_UPS CATA_HUMAN_UPS CFT1_YEAST CO5_HUMAN_UPS CRP_HUMAN_UPS CWC22_YEAST CYB5_HUMAN_UPS CYC_HUMAN_UPS EGF_HUMAN_UPS FABPH_HUMAN_UPS FCP1_YEAST FRDA_YEAST GEF1_YEAST GELS_HUMAN_UPS GSTA1_HUMAN_UPS GSTP1_HUMAN_UPS HBA_HUMAN_UPS HBB_HUMAN_UPS IFNG_HUMAN_UPS IGF2_HUMAN_UPS IL8_HUMAN_UPS KCRM_HUMAN_UPS LALBA_HUMAN_UPS LEP_HUMAN_UPS LYSC_HUMAN_UPS MYG_HUMAN_UPS NEDD8_HUMAN_UPS NQO1_HUMAN_UPS NQO2_HUMAN_UPS OST2_YEAST PDGFB_HUMAN_UPS PEX1_YEAST PPIA_HUMAN_UPS PRDX1_HUMAN_UPS RASH_HUMAN_UPS RET4_HUMAN_UPS RL22A_YEAST RL9A_YEAST RL9B_YEAST RS27A_HUMAN_UPS SODC_HUMAN_UPS SUMO1_HUMAN_UPS SYHC_HUMAN_UPS SYUG_HUMAN_UPS TAU_HUMAN_UPS TEC1_YEAST THIO_HUMAN_UPS TNFA_HUMAN_UPS TRFE_HUMAN_UPS TRFL_HUMAN_UPS UB2E1_HUMAN_UPS UBC9_HUMAN_UPS UBE2C_HUMAN_UPS YL363_YEAST 0 2 4 6 -2.5 0.0 2.5 5.0 log2(fc) -log10(qval) Save figure

GELS_HUMAN_UPS KCRM_HUMAN_UPS PDGFB_HUMAN_UPS ANT3_HUMAN_UPS HBB_HUMAN_UPS FABPH_HUMAN_UPS CAH2_HUMAN_UPS CRP_HUMAN_UPS SYHC_HUMAN_UPS RL22A_YEAST TEC1_YEAST NQO2_HUMAN_UPS CYC_HUMAN_UPS TRFE_HUMAN_UPS CAH1_HUMAN_UPS NEDD8_HUMAN_UPS FCP1_YEAST LEP_HUMAN_UPS IGF2_HUMAN_UPS LYSC_HUMAN_UPS HBA_HUMAN_UPS PEX1_YEAST SYUG_HUMAN_UPS PPIA_HUMAN_UPS LALBA_HUMAN_UPS TRFL_HUMAN_UPS ALBU_HUMAN_UPS CYB5_HUMAN_UPS RASH_HUMAN_UPS PRDX1_HUMAN_UPS NQO1_HUMAN_UPS FRDA_YEAST OST2_YEAST IFNG_HUMAN_UPS THIO_HUMAN_UPS SODC_HUMAN_UPS UBC9_HUMAN_UPS RL9A_YEAST BID_HUMAN_UPS TNFA_HUMAN_UPS YL363_YEAST GEF1_YEAST ANXA5_HUMAN_UPS MYG_HUMAN_UPS CO5_HUMAN_UPS GSTP1_HUMAN_UPS GSTA1_HUMAN_UPS IL8_HUMAN_UPS SUMO1_HUMAN_UPS B2MG_HUMAN_UPS UBE2C_HUMAN_UPS UB2E1_HUMAN_UPS CWC22_YEAST TAU_HUMAN_UPS CATA_HUMAN_UPS EGF_HUMAN_UPS RET4_HUMAN_UPS CFT1_YEAST RS27A_HUMAN_UPS RL9B_YEAST inj1_500amol inj2_500amol inj3_500amol inj4_500amol inj1_50fmol inj2_50fmol inj3_50fmol inj4_50fmol 6 7 8 9 log_intensity Save figure